Bioinformatics Scientist/Engineer (Sr.)

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    "requisitionDescription": "\n    <link href=\"https://cdn.jsdelivr.net/npm/[email protected]/css/froala_editor.pkgd.min.css\" rel=\"stylesheet\" type=\"text/css\" />\n    <link href=\"https://cdn.jsdelivr.net/npm/[email protected]/css/froala_style.min.css\" rel=\"stylesheet\" type=\"text/css\" />\n\n    <div class=\"fr-view\">\n      <p style='margin:0in;font-size:16px;font-family:\"Times New Roman\",serif;border:none;'>(Actual title dependent upon experience)</p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:16px;font-family:\"Times New Roman\",serif;'>&nbsp;</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>Universal Sequencing Technology Corporation, a biotech company headquartered in greater Boston with a branch in San Diego, is looking for a Bioinformatics software engineer to join the team. This position is a unique opportunity to work on company&rsquo;s novel technology for the Next Generation Sequencing (NGS) platforms that enables many previously unachievable applications. This person will lead the development of genomic data analysis algorithms and numerical data simulation to solve challenge genomics problems in one or more of the NGS bioinformatics areas, such as haplotype phasing, structure variation detection, de novo assembly, metagenomics, and target sequencing/clinical bioinformatics as well as single cell sequencing analysis. The ideal candidate will have strong background in NGS data analysis using techniques such as sequence alignment, text indexing and searching, genome assembly, graph algorithms, combinatorial optimization and probability theory.&nbsp;</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>&nbsp;</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>In addition to strong programming skills, the candidate must have a keen interest in biology and working with real-world data. Strong interpersonal skills, a desire to understand genomics researcher needs and the ability to communicate results clearly are a must. This position will interact closely with colleagues in molecular biology.</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>&nbsp;</span></p><p style='margin:0in;font-size:16px;font-family:\"Times New Roman\",serif;border:none;'><strong><span style=\"font-size:13px;\">Desired Skills:</span></strong></p><ul style=\"list-style-type: disc;margin-left:0in;\"><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Strong programming experience in C/C++, Java, Python, Perl, Shell scripting.</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Strong experience with NGS DNA sequence data analysis pipelines</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Strong experience developing bioinformatics algorithms in NGS genomic data analysis</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Strong experience developing tools for numerical data analysis and simulation</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Hands on experience with NGS data analysis tools (e.g. bwa, samtools, SNP Graph, RefHap, HapCut, Bandage, etc.)</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Experience building and releasing commercial or open source software</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Experience and/or strong knowledge in cloud computing (AWS) a plus.&nbsp;</span></li></ul><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;margin-left:.5in;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>&nbsp;</span></p><p style='margin:0in;font-size:16px;font-family:\"Times New Roman\",serif;border:none;'><strong><span style=\"font-size:13px;\">Duties and Responsibilities:</span></strong></p><ul style=\"list-style-type: disc;margin-left:0in;\"><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Analyze internally generated sequencing data</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Work with internal and/or external biologists to understand applications and requirements</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Design and develop new data analysis pipeline processes using internally developed algorithms</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Design and develop software for applications in haplotype phasing, Structural Variation detections and <em>de novo</em> assembly</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Investigate and integrate open source software for use with our proprietary technologies</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Work with internal and/or external users to develop and support customized solutions based on our core products</span></li></ul><ul style=\"list-style-type: disc;margin-left:undefined;\"><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Actively participate in all phases of SDLC, including development, testing, bug fixing and user support.</span></li></ul><ul style=\"list-style-type: disc;margin-left:0in;\"><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Write and maintain good documentations, such as, software specifications, architecture designs, testing plans and deployment plans.</span></li><li><span style='font-family:\"Times New Roman\",serif;font-size:13px;'>Other work and project assignments as required.</span></li></ul><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>&nbsp;</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><strong><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>Qualifications:</span></strong></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>PhD in computer science, bioinformatics or related field with 0-3 years of postdoctoral experience</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>MSc in computer science, bioinformatics or related field with at least 5 years of post-graduate experience</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>Experience in any of the NGS bioinformatics areas such as haplotype phasing, structure variation detection, de novo assembly and metagenomics as well as target sequencing and clinical bioinformatics</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>Experience in single cell sequencing analysis is a plus.</span></p><p style='margin:0in;font-size:15px;font-family:\"Helvetica\",sans-serif;color:black;border:none;'><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>Work well both independently and in a team environment</span></p><p><span style='font-size:13px;font-family:\"Times New Roman\",serif;'>Ability to work in a fast-paced and quickly changing environment</span></p>\n    </div>\n  \n",
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